Given two float[replica][intensities] for treat and cont, for each oligo makes and returns all pairwise log2 ratios
between treat and control replicas.
Given two float[replica][intensities] for treat and cont, for each oligo makes and returns all pairwise relative differences
between treat and control replicas.
Loads AWS Credentials from the file samples.properties
(S3CodeSamples.SAMPLES_PROPERTIES_NAME) that must be available in the
classpath, and must contain settings awsAccessKey and
awsSecretKey.
Loads a tab delimited file into a LinkedHashMap where each line is broken into cells and loaded into
a LinkedHashMap where the cells are the keys and the value is the line.
Makes a tab delimited results line:
PRIMER_LEFT_SEQUENCE
PRIMER_RIGHT_SEQUENCE
PRIMER_LEFT_TM
PRIMER_RIGHT_TM
PRIMER_PRODUCT_SIZE
The user entered line
If no results then leaves no picks message.