trans.bkgrnd
Class LoadedOligo

java.lang.Object
  extended bytrans.bkgrnd.LoadedOligo
All Implemented Interfaces:
java.lang.Comparable

public class LoadedOligo
extends java.lang.Object
implements java.lang.Comparable

BPMap line contain gc and tm calculations.


Constructor Summary
LoadedOligo(java.lang.String line)
           
LoadedOligo(java.lang.String chromosome, int startPosition, java.lang.String sequence, double intensityPM, double intensityMM, double tm, double gc)
           
 
Method Summary
 int compareTo(java.lang.Object obj)
           
 java.lang.String getChromosome()
           
 double getGc()
           
 double getIntensityMM()
           
 double getIntensityPM()
           
 int getNumberMisMatches()
           
 java.lang.String getSequence()
           
 int getStartPosition()
           
 double getTm()
           
 void setIntensityPM(double intensityPM)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

LoadedOligo

public LoadedOligo(java.lang.String chromosome,
                   int startPosition,
                   java.lang.String sequence,
                   double intensityPM,
                   double intensityMM,
                   double tm,
                   double gc)

LoadedOligo

public LoadedOligo(java.lang.String line)
Method Detail

compareTo

public int compareTo(java.lang.Object obj)
Specified by:
compareTo in interface java.lang.Comparable

getChromosome

public java.lang.String getChromosome()

getGc

public double getGc()

getIntensityMM

public double getIntensityMM()

getIntensityPM

public double getIntensityPM()

getSequence

public java.lang.String getSequence()

getStartPosition

public int getStartPosition()

getTm

public double getTm()

getNumberMisMatches

public int getNumberMisMatches()

setIntensityPM

public void setIntensityPM(double intensityPM)