trans.bkgrnd
Class LoadedOligo
java.lang.Object
trans.bkgrnd.LoadedOligo
- All Implemented Interfaces:
- java.lang.Comparable
- public class LoadedOligo
- extends java.lang.Object
- implements java.lang.Comparable
BPMap line contain gc and tm calculations.
Constructor Summary |
LoadedOligo(java.lang.String line)
|
LoadedOligo(java.lang.String chromosome,
int startPosition,
java.lang.String sequence,
double intensityPM,
double intensityMM,
double tm,
double gc)
|
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
LoadedOligo
public LoadedOligo(java.lang.String chromosome,
int startPosition,
java.lang.String sequence,
double intensityPM,
double intensityMM,
double tm,
double gc)
LoadedOligo
public LoadedOligo(java.lang.String line)
compareTo
public int compareTo(java.lang.Object obj)
- Specified by:
compareTo
in interface java.lang.Comparable
getChromosome
public java.lang.String getChromosome()
getGc
public double getGc()
getIntensityMM
public double getIntensityMM()
getIntensityPM
public double getIntensityPM()
getSequence
public java.lang.String getSequence()
getStartPosition
public int getStartPosition()
getTm
public double getTm()
getNumberMisMatches
public int getNumberMisMatches()
setIntensityPM
public void setIntensityPM(double intensityPM)