All Classes
ADFDataBaseSplitter
AWSAuthConnection
AccountManagement
AggregatePlots
AlignPanel
AlignParams
AlignedBaseCounter
AlignerInputForm
AlignerInputPanel
AlignerPreferences
AlignerThread
Alignment
Alignment
AnnoSpecParams
AnnotateRegions
AnnotateRegionsWithGeneList
Annotation
AntibodyBase
AntibodyBean
AntibodyModify
AntibodyPrep
AntibodySpreadSheet
AntibodyViewPreferences
Archive
ArrayPrinter
AverageACels
AverageDoubles
AveragePCels
BL2Seq
BL2SeqHit
BackGroundOligo
Bar2Gr
Base64
Base64.InputStream
Base64.OutputStream
Bed2Gr
Bin
Bin
BindingPeak
BindingRegion
BindingRegionComparator
BindingRegionGraphPrinter
BindingRegionsToGff3
BindingRegionsToIntervals
Blast
Blast
BlastFilterResult
BlastMatcher
BlastResult
Box
BrowseButtonAction
Bucket
CalcBkgrndRatios
CalcGCAndTransform
CalcGCRatiosFromIntervals
CalculateBackgroundStats
CelFileConverter
CelFileQualityControl
CelFileStats
CelLine
CelMapper
CelMasker
CelPHistogram
CelProcessor
CellType
CellTypeBean
ChartFrame
ChromSet
ChromosomeIndex
Cluster
ClusterDrawFrame
ClusterDrawPanel
CollapseTPMap
CombineXYSeries
CommitFiles
CommonPrefixEntry
ComparatorMultiSetQuantile
ComparatorQuantile
ConservedSeqs
Console
Contact
ContactBean
ControlGene
ControlStats
ConvertAgilentData
ConvertFasta2GCBoolean
ConvertGeoData
ConvertNimblegenNDF2TPMap
ConvertNimblegenPAIR2Cela
ConvertTPMapsToFeatures
ConvertTVSToCelps
CoordinateExtractor1lq
Coordinates
Correlate
CorrelateGrFiles
CorrelationMaps
CorrelationWindow
CronArchive
CubicSpline
DBUtil
DeleteMeNow
Delme2
DelmeAligner
DestypeIntensityCalculator
DmelCGNameCoordinatePrinter
DmelRel4Extractor
DrosGeneCollFileParser
Email
Enzyme
ExonIntron
ExonScoreExtractor
ExportIntergenicRegions
ExportIntervalData
ExportIntronicRegions
ExpressedGene
ExpressionScores2CoordinatesViaGFF
ExtractGffFeatures
ExtractNonOverlappingWindows
ExtractSaveSgrScores
ExtractScoresForRoc
ExtractWords
FDRVsQValues
FDRWindowConverter
Feature
FetchGenomicSequences
FetchIndexedSequence
FileFocusListener
FileInputForm
FileInputPanel
FileJoiner
FileSize
FileSplitter
FileTrimmer
FilterTPMapByRegions
FindSubBindingRegions
Flash
GATAFrame
GATAParams
GATAPlotter
GATAUtil
GATAligner
GCRatio
GadFlyGffExtractor
Gene
GeneBean
GeneGroup
GeneNameCounter
GeneRep
GeneRepGlyph
GenericFeature
GenericGlyph
GenomeFASTASplitter
GenomicRegion
GenomicRegionGlyph
GetResponse
Gff2ToBindingRegions
Gff2ToIntervals
Gff3Feature
Gff3Parser
GffFeature
GffParser
GlyphPanel
Gr
Gr2Bar
GrComparator
GrGraph
Graph
HTML
HierarchicalClustering
Histogram
HistogramSgrOrGrFile
HouseBean
IO
IdNameMatch
IndexFastas
IndexRegions
IndexedSequence
InefficientPseudoMedian
IntensityFeature
IntensityPrinter
IntersectBindingPeaks
IntersectKeyWithRegions
IntersectLists
IntersectRegions
Interval
IntervalComparator
IntervalDrawFrame
IntervalDrawPanel
IntervalFilter
IntervalGFFPrinter
IntervalGraphPrinter
IntervalMaker
IntervalPlotter
IntervalReportPrinter
JQSub
Job
LabGroup
LinearRegression
ListAllMyBucketsResponse
ListBucketResponse
ListEntry
LoadChipSetIntervalOligoInfo
LoadIntervalOligoInfo
LoadedOligo
LocalAlignment
Login
LoginBean
Logout
LowerCase2Xs
MD5
MD5Crypt
MakeAllWindows
MakeBioTools
MakeChromosomeSets
MapControlIntensities
MapFeature
MapSplitter
Marker
MarkerBean
MemeMotif
MemeParser
MemeR
MemeResults
MergeRegions
MergeWindowArrays
MethodTester
Misc
MotifHit
MotifScanner
MotifSearchResult
MultiAlignPanel
MultiFastaParser
MultiSGRPrinter
MultiSetQuantile
MultiWindowIntervalMaker
MummerMapper
NEBParser
NewAntibody
NewOligo
NewPlasmid
NewStrain
NucleicAcid
Num
Oligo
OligoBase
OligoBean
OligoFlipper
OligoIntensityPrinter
OligoMatch
OligoModify
OligoSpreadSheet
OligoUpload
OligoUploadBean
OligoViewPreferences
Organism
OrganismBean
Organization
OverlapCounter
OverlappingWindowScoreExtractor
Owner
PWMScoreWindows
ParseBarsForParticularRegions
ParseMLSHTML
ParsePatternedWindows
ParseSgrsForParticularRegions
ParseSgrsForParticularScores
ParseXMLFile
Parser1lq
Passwords
PatternMatch
PeakPicker
PlasmidBase
PlasmidBean
PlasmidModify
PlasmidSpreadSheet
PlasmidUpload
PlasmidUploadBean
PlasmidViewPreferences
PlotFloatArrays
PlotterPreferences
PosRegion
Positive
PositiveComparator
PossumToGFF
Preference
PrependColumn
Primer3Pick
Primer3Wrapper
PrintSelectColumns
QualityFileParser
Quantile
QuantileNormalization
QueryStringAuthGenerator
REDigest
RandomRegions
RandomizeLabels
RankSample
RankSampleIndexComparator
RankSampleValueComparator
RankedFloatArray
RankedSetAnalysis
RankedSetDrawFrame
RankedSetDrawPanel
ReadZip
ReagentBean
Region
RegionComparator
Regions2Intervals
RenameRWSResults
RenameWords
RepeatMaskerToGFF
ReplaceWindowScores
Response
RocWindow
RocWindowScanner
RotateCelFile
S3CodeSamples
S3Manager
S3Object
SQL
SamChromosomeData
SaveImageForm
SaveImagePanel
ScaleBar
ScanChip
ScanChromosomes
ScanGenes
ScatterDrawFrame
ScatterDrawPanel
ScatterPlot
ScoreChromosomes
ScoreIntervals
ScoreSequences
ScoredGene
ScoredRegionsFormatFixer
Search
SearchBean
SearchHit
SelexParams
SelexSeqParser
Seq
SeqFiles
SeqRead
Seqs
SetNumberIntervalMaker
Sgr
Sgr2Bar
SgrBacCounter
SgrComparator
SimpleBlast
SimpleTextWindow
Sliders
Spammer
SpearmanCorrelation
SplineScalar
SplitWindowArraysByChromosome
StartEnd
StartStop
Stat1lq
StatFlag
StatIntensityFeatureArray
StatTPMap
StatTPMapControlSeqs
StrainBase
StrainBean
StrainModify
StrainPreference
StrainSpreadSheet
StrainUpload
StrainUploadBean
StrainViewPreferences
SubSeq
SubWindow
SubtractOneFromLastColumn
Swing
SynonymTables
T2
T2Parameter
TASSignalChromFileSplitter
TPMapDensityReducer
TPMapDuplicateFilter
TPMapFeature
TPMapLine
TPMapOligoBlastFilter
TPMapProcessor
TPMapSort
TPMapStripHighLowGC
TableHeading
TestScanChip
TextFrame
TextPValOrSig2Gr
TextParser
TextWindow
ToolsFrame
TransGroup
TransGrpGlyph
Transcript
TransformRatios
Translation
UCSCGeneLine
UCSCGeneLineComparator
UCSCGeneModelTableReader
UseDilution
UserBean
UserRegistration
UserRegistrationBean
Util
Util
UtilMeme
UtilSelex
Utils
VirtualCel
VirtualCelFrame
VirtualCelPanel
WilcoxonRankSumTest
WilcoxonSample
WilcoxonSamplePair
WilcoxonSignedRankTest
Window
WindowBlockMaker
WindowBlockMakerTwoColor
WindowComparator
WindowHistogram
WindowMaker
WindowScoreSmoother
Windows2HeatMapSgr
XML
Xamer
XamerCounter