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J

JQSub - class util.apps.JQSub.
Fires command lines on clusters through qsub.
JQSub(String[]) - Constructor for class util.apps.JQSub
 
Job - class util.gen.Job.
 
Job(String[]) - Constructor for class util.gen.Job
 
joinSegments(ArrayList) - Static method in class gata.main.GATAUtil
Takes an ArrayList of int[2]'s representing start stop coords kills the dups, and those cotained within another seg, will merge overlapping segments.
joinSegments(ArrayList) - Static method in class util.bio.annotation.GeneGroup
Takes an ArrayList of int[2]'s representing start stop coords kills the dups, and those cotained within another seg, will merge overlapping segments.

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