Uses of Class
bioroot.strain.StrainBean

Packages that use StrainBean

bioroot
bioroot.strain

Uses of StrainBean in bioroot

Methods in bioroot that return StrainBean

static StrainBean[]

Archive.makeStrainBeans(DBUtil bioRoot, UserBean userBean) Makes an array of all visibile StrainBeans

Methods in bioroot with parameters of type StrainBean

static java.util.ArrayList

Archive.fetchFiles(PlasmidBean[] plasmids, StrainBean[] strains, AntibodyBean[] antibodies, java.lang.String filePath, DBUtil bioRoot) Fetches any plasmid or strain files.

Uses of StrainBean in bioroot.strain

Methods in bioroot.strain that return StrainBean

StrainBean[]	StrainUploadBean.getStrainBeans()
static StrainBean[]	StrainSpreadSheet.fetchStrainBeans(java.lang.String sql, DBUtil bioRoot) Build StrainBean[] from Strain table in database.
static StrainBean[]	StrainSpreadSheet.orderStrains(java.lang.String featureName, UserBean userBean, StrainBean[] beans, DBUtil bioRoot) Orders strains, sort of nasty, can't figure another way, reflection is way too slow.
static StrainBean[]	StrainBase.reverseStrainBeans(StrainBean[] beans) Reverses the order of an array of StrainBeans.

Methods in bioroot.strain with parameters of type StrainBean

void	StrainUploadBean.setStrainBeans(StrainBean[] beans)
static void	StrainUpload.appendStrainBeans(javax.servlet.http.HttpSession session, StrainBean[] newBeans) Sets strainBeans attribute by appending any new beans to the beginning.
static java.lang.String	StrainSpreadSheet.fetchStrainTableRows(UserBean userBean, StrainBean[] beans, int[] startStop, DBUtil bioRoot, boolean checked, boolean allTabs) Returns table rows for every oligo according to a Preference, if allTabs==true, then all features are returned in a tab delimited format, otherwise its HTML.
static StrainBean[]	StrainSpreadSheet.orderStrains(java.lang.String featureName, UserBean userBean, StrainBean[] beans, DBUtil bioRoot) Orders strains, sort of nasty, can't figure another way, reflection is way too slow.
static java.lang.String	StrainModify.deleteStrain(StrainBean strainBean, UserBean userBean, DBUtil bioRoot) Attempts to delete an strain, if sucessful, returns a "" String, otherwise an error message.
static boolean	StrainModify.updateStrainCommonAccessFields(StrainBean bean, UserBean userBean, java.util.HashMap nameValue, DBUtil bioRoot) Just update the commonly accessible fields: restock, lastUser, remainingAliquots, comments
static java.lang.String	StrainModify.updateStrain(StrainBean bean, UserBean userBean, java.util.HashMap nameValue, javax.servlet.http.HttpServletRequest request, DBUtil bioRoot) Attempts to update a StrainBean in the database, only checks that the name is unique if it has changed.
static boolean	StrainModify.subtractAndSetStrainBeans(StrainBean[] strainBeans, javax.servlet.http.HttpSession session) Subtracts a bean from the StrainBean[] and resets it in strainBeansToEdit
static StrainBean[]	StrainBase.reverseStrainBeans(StrainBean[] beans) Reverses the order of an array of StrainBeans.
static java.lang.String	StrainBase.getStrainReport(StrainBean sb, DBUtil bioRoot, UserBean userBean, boolean commonForm) Returns an strain report.
static java.lang.String	StrainBase.getStrainForm(StrainBean sb, DBUtil bioRoot, UserBean userBean) Returns a strain form filled with the values in the bean.
static void	NewStrain.removePlasmid(StrainBean bean, java.util.HashMap nameValue, DBUtil bioRoot)
static void	NewStrain.addPlasmid(StrainBean bean, java.util.HashMap nameValue, DBUtil bioRoot, UserBean userBean)
static void	NewStrain.removeParent(StrainBean bean, java.util.HashMap nameValue, DBUtil bioRoot)
static void	NewStrain.addParent(StrainBean bean, java.util.HashMap nameValue, DBUtil bioRoot, UserBean userBean)