bioroot.strain
Class StrainSpreadSheet

java.lang.Object
  javax.servlet.GenericServlet
      javax.servlet.http.HttpServlet
          bioroot.strain.StrainSpreadSheet

All Implemented Interfaces:

java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig

public class StrainSpreadSheet

extends javax.servlet.http.HttpServlet

Author:

nix

See Also:

Serialized Form

Constructor Summary

StrainSpreadSheet()

Method Summary

void	doGet(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
void	doPost(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
static StrainBean[]	fetchStrainBeans(java.lang.String sql, DBUtil bioRoot) Build StrainBean[] from Strain table in database.
static java.lang.String	fetchStrainTableRows(UserBean userBean, StrainBean[] beans, int[] startStop, DBUtil bioRoot, boolean checked, boolean allTabs) Returns table rows for every oligo according to a Preference, if allTabs==true, then all features are returned in a tab delimited format, otherwise its HTML.
static void	makeAndSetStrainBeans(javax.servlet.http.HttpSession session, DBUtil bioRoot, UserBean userBean) Makes an array of StrainBeans based on Users StrainPreferences and sets them in the session.
static StrainBean[]	orderStrains(java.lang.String featureName, UserBean userBean, StrainBean[] beans, DBUtil bioRoot) Orders strains, sort of nasty, can't figure another way, reflection is way too slow.

Methods inherited from class javax.servlet.http.HttpServlet

service

Methods inherited from class javax.servlet.GenericServlet

destroy, getInitParameter, getInitParameterNames, getServletConfig, getServletContext, getServletInfo, getServletName, init, init, log, log

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

StrainSpreadSheet

public StrainSpreadSheet()

Method Detail

doGet

public void doGet(javax.servlet.http.HttpServletRequest request,
                  javax.servlet.http.HttpServletResponse response)
           throws javax.servlet.ServletException,
                  java.io.IOException

Throws:

javax.servlet.ServletException

java.io.IOException

doPost

public void doPost(javax.servlet.http.HttpServletRequest request,
                   javax.servlet.http.HttpServletResponse response)
            throws javax.servlet.ServletException,
                   java.io.IOException

Throws:

javax.servlet.ServletException

java.io.IOException

makeAndSetStrainBeans

public static void makeAndSetStrainBeans(javax.servlet.http.HttpSession session,
                                         DBUtil bioRoot,
                                         UserBean userBean)

Makes an array of StrainBeans based on Users StrainPreferences and sets them in the session.

fetchStrainTableRows

public static java.lang.String fetchStrainTableRows(UserBean userBean,
                                                    StrainBean[] beans,
                                                    int[] startStop,
                                                    DBUtil bioRoot,
                                                    boolean checked,
                                                    boolean allTabs)

Returns table rows for every oligo according to a Preference, if allTabs==true, then all features are returned in a tab delimited format, otherwise its HTML. Set startStop to 0,0 if you want everything.

fetchStrainBeans

public static StrainBean[] fetchStrainBeans(java.lang.String sql,
                                            DBUtil bioRoot)

Build StrainBean[] from Strain table in database.

orderStrains

public static StrainBean[] orderStrains(java.lang.String featureName,
                                        UserBean userBean,
                                        StrainBean[] beans,
                                        DBUtil bioRoot)

Orders strains, sort of nasty, can't figure another way, reflection is way too slow.