bioroot
Class Archive

java.lang.Object
  javax.servlet.GenericServlet
      javax.servlet.http.HttpServlet
          bioroot.Archive

All Implemented Interfaces:

java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig

public class Archive

extends javax.servlet.http.HttpServlet

Author:

nix Creates a tab delimited text file for download, a full copy of a users collection limited by user type.

See Also:

Serialized Form

Constructor Summary

Archive()

Method Summary

static java.lang.String	buildSqlStatement(UserBean user, java.lang.String tableName) Creates a sql statement for super users and standard users returns null for everyone else, lab specific.
static java.lang.String	buildTabTableRows(java.lang.String[][] columnRows) Build tab delimited table rows.
void	doGet(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
void	doPost(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
static java.util.ArrayList	fetchFiles(PlasmidBean[] plasmids, StrainBean[] strains, AntibodyBean[] antibodies, java.lang.String filePath, DBUtil bioRoot) Fetches any plasmid or strain files.
static java.lang.String	fetchTabbedTableColumnRow(Feature[] features) Returns a table header row using the Preferece obj
static AntibodyBean[]	makeAntibodyBeans(DBUtil bioRoot, UserBean userBean) Makes an array of all visibile AntibodyBeans
static OligoBean[]	makeOligoBeans(DBUtil bioRoot, UserBean userBean) Makes an array of all visibile OligoBeans
static PlasmidBean[]	makePlasmidBeans(DBUtil bioRoot, UserBean userBean) Makes an array of all visibile PlasmidBeans
static StrainBean[]	makeStrainBeans(DBUtil bioRoot, UserBean userBean) Makes an array of all visibile StrainBeans

Methods inherited from class javax.servlet.http.HttpServlet

service

Methods inherited from class javax.servlet.GenericServlet

destroy, getInitParameter, getInitParameterNames, getServletConfig, getServletContext, getServletInfo, getServletName, init, init, log, log

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Archive

public Archive()

Method Detail

doGet

public void doGet(javax.servlet.http.HttpServletRequest request,
                  javax.servlet.http.HttpServletResponse response)
           throws javax.servlet.ServletException,
                  java.io.IOException

Throws:

javax.servlet.ServletException

java.io.IOException

doPost

public void doPost(javax.servlet.http.HttpServletRequest request,
                   javax.servlet.http.HttpServletResponse response)
            throws javax.servlet.ServletException,
                   java.io.IOException

Throws:

javax.servlet.ServletException

java.io.IOException

fetchFiles

public static java.util.ArrayList fetchFiles(PlasmidBean[] plasmids,
                                             StrainBean[] strains,
                                             AntibodyBean[] antibodies,
                                             java.lang.String filePath,
                                             DBUtil bioRoot)

Fetches any plasmid or strain files.

makeOligoBeans

public static OligoBean[] makeOligoBeans(DBUtil bioRoot,
                                         UserBean userBean)

Makes an array of all visibile OligoBeans

makePlasmidBeans

public static PlasmidBean[] makePlasmidBeans(DBUtil bioRoot,
                                             UserBean userBean)

Makes an array of all visibile PlasmidBeans

makeAntibodyBeans

public static AntibodyBean[] makeAntibodyBeans(DBUtil bioRoot,
                                               UserBean userBean)

Makes an array of all visibile AntibodyBeans

makeStrainBeans

public static StrainBean[] makeStrainBeans(DBUtil bioRoot,
                                           UserBean userBean)

Makes an array of all visibile StrainBeans

fetchTabbedTableColumnRow

public static java.lang.String fetchTabbedTableColumnRow(Feature[] features)

Returns a table header row using the Preferece obj

buildTabTableRows

public static java.lang.String buildTabTableRows(java.lang.String[][] columnRows)

Build tab delimited table rows.

buildSqlStatement

public static java.lang.String buildSqlStatement(UserBean user,
                                                 java.lang.String tableName)

Creates a sql statement for super users and standard users returns null for everyone else, lab specific.