bioroot
Class BlastMatcher

java.lang.Object
  bioroot.BlastMatcher

All Implemented Interfaces:

java.lang.Comparable

public class BlastMatcher

extends java.lang.Object

implements java.lang.Comparable

Author:

nix

Constructor Summary

BlastMatcher(java.sql.ResultSet reagent)
Constructor passed a ResultSet containing an id, name, and sequence; watch order!

BlastMatcher(java.lang.String oligo)

Method Summary

int	compareTo(java.lang.Object obj)
java.util.ArrayList	getBl2SeqHits()
int	getConcatStart()
int	getConcatStop()
int	getId()
java.lang.String	getName()
java.lang.String	getSequence()
double	getSortBy()
boolean	matches(BL2SeqHit[] hits)
void	setBl2SeqHits(java.util.ArrayList bl2SeqHits)
void	setConcatStart(int concatStart)
void	setConcatStop(int concatStop)
void	setSortBy(double sortBy)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastMatcher

public BlastMatcher(java.sql.ResultSet reagent)

Constructor passed a ResultSet containing an id, name, and sequence; watch order!

BlastMatcher

public BlastMatcher(java.lang.String oligo)

Method Detail

compareTo

public int compareTo(java.lang.Object obj)

Specified by:

compareTo in interface java.lang.Comparable

matches

public boolean matches(BL2SeqHit[] hits)

getId

public int getId()

getName

public java.lang.String getName()

getSequence

public java.lang.String getSequence()

getSortBy

public double getSortBy()

setSortBy

public void setSortBy(double sortBy)

getBl2SeqHits

public java.util.ArrayList getBl2SeqHits()

setBl2SeqHits

public void setBl2SeqHits(java.util.ArrayList bl2SeqHits)

getConcatStart

public int getConcatStart()

setConcatStart

public void setConcatStart(int concatStart)

getConcatStop

public int getConcatStop()

setConcatStop

public void setConcatStop(int concatStop)