util.bio.wrappers
Class BL2SeqHit

java.lang.Object
  util.bio.wrappers.BL2SeqHit

public class BL2SeqHit

extends java.lang.Object

BL2Seq result container.

Constructor Summary

BL2SeqHit()

Method Summary

int	getOrientation()
int	getRawScore()
java.lang.String	getSeq1()
java.lang.String	getSeq2()
int	getStartSeq1()
int	getStartSeq2()
int	getStopSeq1()
int	getStopSeq2()
void	setOrientation(int orientation)
void	setRawScore(int rawScore)
void	setSeq1(java.lang.String seq1)
void	setSeq2(java.lang.String seq2)
void	setStartSeq1(int startSeq1)
void	setStartSeq2(int startSeq2)
void	setStopSeq1(int stopSeq1)
void	setStopSeq2(int stopSeq2)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BL2SeqHit

public BL2SeqHit()

Method Detail

getOrientation

public int getOrientation()

setOrientation

public void setOrientation(int orientation)

getRawScore

public int getRawScore()

setRawScore

public void setRawScore(int rawScore)

getSeq1

public java.lang.String getSeq1()

setSeq1

public void setSeq1(java.lang.String seq1)

getSeq2

public java.lang.String getSeq2()

setSeq2

public void setSeq2(java.lang.String seq2)

getStartSeq1

public int getStartSeq1()

setStartSeq1

public void setStartSeq1(int startSeq1)

getStartSeq2

public int getStartSeq2()

setStartSeq2

public void setStartSeq2(int startSeq2)

getStopSeq1

public int getStopSeq1()

setStopSeq1

public void setStopSeq1(int stopSeq1)

getStopSeq2

public int getStopSeq2()

setStopSeq2

public void setStopSeq2(int stopSeq2)