Uses of Package
bioroot

Packages that use bioroot
bioroot   
bioroot.antibody   
bioroot.oligo   
bioroot.plasmid   
bioroot.strain   
 

Classes in bioroot used by bioroot
DBUtil
          Utility class to hold database relevant methods and fields, some from Hall and Brown The following is a collection of stuff for interacting with a SQL database First open a connection by calling connectMySQL, then get results with executeSQL, then close the connection with closeConnection.
Feature
           
IdNameMatch
           
LabGroup
           
LoginBean
           
Organization
          Container for holding info about Organization membership.
PatternMatch
          Class to hold information and helper methods relating to pattern matches.
Preference
           
ReagentBean
           
SearchHit
          Holds info relating to a search hit from a database LIKE query.
UserBean
          User information.
 

Classes in bioroot used by bioroot.antibody
DBUtil
          Utility class to hold database relevant methods and fields, some from Hall and Brown The following is a collection of stuff for interacting with a SQL database First open a connection by calling connectMySQL, then get results with executeSQL, then close the connection with closeConnection.
Feature
           
ReagentBean
           
UserBean
          User information.
 

Classes in bioroot used by bioroot.oligo
DBUtil
          Utility class to hold database relevant methods and fields, some from Hall and Brown The following is a collection of stuff for interacting with a SQL database First open a connection by calling connectMySQL, then get results with executeSQL, then close the connection with closeConnection.
IdNameMatch
           
Preference
           
ReagentBean
           
UserBean
          User information.
 

Classes in bioroot used by bioroot.plasmid
BlastMatcher
           
DBUtil
          Utility class to hold database relevant methods and fields, some from Hall and Brown The following is a collection of stuff for interacting with a SQL database First open a connection by calling connectMySQL, then get results with executeSQL, then close the connection with closeConnection.
IdNameMatch
           
ReagentBean
           
UserBean
          User information.
 

Classes in bioroot used by bioroot.strain
DBUtil
          Utility class to hold database relevant methods and fields, some from Hall and Brown The following is a collection of stuff for interacting with a SQL database First open a connection by calling connectMySQL, then get results with executeSQL, then close the connection with closeConnection.
IdNameMatch
           
Preference
           
ReagentBean
           
UserBean
          User information.