Uses of Class
bioroot.antibody.AntibodyBean

Packages that use AntibodyBean

bioroot
bioroot.antibody

Uses of AntibodyBean in bioroot

Methods in bioroot that return AntibodyBean

static AntibodyBean[]

Archive.makeAntibodyBeans(DBUtil bioRoot, UserBean userBean) Makes an array of all visibile AntibodyBeans

Methods in bioroot with parameters of type AntibodyBean

static java.util.ArrayList

Archive.fetchFiles(PlasmidBean[] plasmids, StrainBean[] strains, AntibodyBean[] antibodies, java.lang.String filePath, DBUtil bioRoot) Fetches any plasmid or strain files.

Uses of AntibodyBean in bioroot.antibody

Methods in bioroot.antibody that return AntibodyBean

static AntibodyBean[]	AntibodySpreadSheet.fetchAntibodyBeans(java.lang.String sql, DBUtil bioRoot) Build AntibodyBean[] from Antibody table in database.
static AntibodyBean[]	AntibodySpreadSheet.orderAntibodies(java.lang.String featureName, UserBean userBean, AntibodyBean[] beans, DBUtil bioRoot) Orders antibodys, sort of nasty, can't figure another way, reflection is way too slow.
static AntibodyBean[]	AntibodyBase.reverseAntibodyBeans(AntibodyBean[] beans) Reverses the order of an array of PlasmidBeans.

Methods in bioroot.antibody with parameters of type AntibodyBean

static void	NewAntibody.addAnAntibodyPrep(AntibodyBean bean, DBUtil bioRoot) Adds a new antibodyPrep to the AntibodyBean
static void	NewAntibody.addUseDilution(AntibodyBean bean, DBUtil bioRoot, int idAntibodyPrep) Adds a new UseDilution to the indicated AntibodyPrep
static void	NewAntibody.loadAntibodyBean(java.util.HashMap nameValue, DBUtil bioRoot, AntibodyBean ab, javax.servlet.http.HttpServletRequest request)
static void	NewAntibody.loadAntibodyPrepBeans(java.util.HashMap nameValue, DBUtil bioRoot, AntibodyBean ab, javax.servlet.http.HttpServletRequest request)
static java.lang.String	AntibodySpreadSheet.fetchAntibodyTableRows(UserBean userBean, AntibodyBean[] beans, int[] startStop, DBUtil bioRoot, boolean checked, boolean allTabs) Returns table rows for every oligo according to a Preference, if allTabs==true, then all features are returned in a tab delimited format, otherwise its HTML.
static int	AntibodySpreadSheet.addBlankLines(AntibodyBean bean, java.lang.String[] items, int k) Adds "" to items base on the number of preps and uses in the antibody bean.
static AntibodyBean[]	AntibodySpreadSheet.orderAntibodies(java.lang.String featureName, UserBean userBean, AntibodyBean[] beans, DBUtil bioRoot) Orders antibodys, sort of nasty, can't figure another way, reflection is way too slow.
static java.lang.String	AntibodyModify.deleteAntibody(AntibodyBean ab, UserBean userBean, DBUtil bioRoot) Attempts to delete an antibody, if sucessful, returns a "" String, otherwise an error message.
static java.lang.String	AntibodyModify.updateAntibodyPreps(AntibodyBean bean, DBUtil bioRoot) Attempts to update the AntibodyPreps and UseDilutions in the database.
static java.lang.String	AntibodyModify.updateAntibody(AntibodyBean bean, UserBean userBean, DBUtil bioRoot) Attempts to update a AntibodyBean in the database, only checks that the name is unique if it has changed.
static boolean	AntibodyModify.subtractAndSetAntibodyBeans(AntibodyBean[] beans, javax.servlet.http.HttpSession session) Subtracts a bean from the AntibodyBean[] and resets it in antibodyBeansToEdit
static void	AntibodyBase.addStrain(AntibodyBean bean, java.util.HashMap nameValue, DBUtil bioRoot, UserBean userBean)
static void	AntibodyBase.removeStrain(AntibodyBean bean, java.util.HashMap nameValue, DBUtil bioRoot)
static void	AntibodyBase.addPlasmid(AntibodyBean bean, java.util.HashMap nameValue, DBUtil bioRoot, UserBean userBean)
static void	AntibodyBase.removePlasmid(AntibodyBean bean, java.util.HashMap nameValue, DBUtil bioRoot)
static java.lang.String	AntibodyBase.deleteUseDilutionIndex(AntibodyBean a, DBUtil bioRoot, java.util.HashMap m) Scans a hashmap for a use dilution to delete returns the index string or null.
static int	AntibodyBase.deleteAntibodyPrepIndex(AntibodyBean a, DBUtil bioRoot, java.util.HashMap m) Scans a hashmap for an antibody prep to delete returns the index number
static int	AntibodyBase.newUseDilutionIndex(AntibodyBean a, DBUtil bioRoot, java.util.HashMap m) Scans a hashmap for a newUseDilution selection, returns the index number
static AntibodyBean[]	AntibodyBase.reverseAntibodyBeans(AntibodyBean[] beans) Reverses the order of an array of PlasmidBeans.
static java.lang.String	AntibodyBase.getAntibodyForm(AntibodyBean ab, DBUtil bioRoot, UserBean userBean) Returns an antibody form filled with the values in the bean.
static void	AntibodyBase.getAntibodyPrepForms(AntibodyBean ab, DBUtil bioRoot, java.lang.StringBuffer b)
static java.lang.String	AntibodyBase.getAntibodyReport(AntibodyBean ab, DBUtil bioRoot, UserBean user, boolean commonForm) Returns an antibody report filled with the values in the bean.
static void	AntibodyBase.getAntibodyPrepReports(AntibodyBean ab, DBUtil bioRoot, java.lang.StringBuffer b, boolean commonForm)