bioroot
Class Util

java.lang.Object
  bioroot.Util

public class Util

extends java.lang.Object

Utility class for BioRoot

Field Summary

static java.lang.String	contactEmail Who do you call?
static int	demoUserId
static java.lang.String	filepath
static java.lang.String	fullPathToBlast
static java.lang.String	HTMLPath
static java.lang.String	IPPort
static int	maxFileSize Maximum allowable file size for upload
static java.lang.String	SMTPAccount SMTP account to use for emailing
static java.lang.String	smtpHostName
static java.lang.String	smtpPassword
static java.lang.String	smtpUser

Constructor Summary

Util()

Method Summary

static java.lang.String	buildHTMLTableRows(java.lang.String[] ids, java.lang.String[][] columnRows, boolean checked) Build HTML table rows.
static java.lang.String	fetchTableColumnRow(Preference pref, java.lang.String reagentType) Returns a table header row using the Preferece obj and a reagentType: Oligo, Plasmid, Strain...
static UserBean	fetchUserBean(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response) Sets a guest user bean if there is none.
static java.lang.String	getViewLine(ReagentBean[] reagentBeans, int[] inView, Preference reagentPreference, java.lang.String reagentType) Returns hot linked html for 1-30 31-60 ...
static java.lang.String[]	getVisibilities(UserBean userBean, DBUtil bioRoot) If user is part of an organization, it returns WWW, orgName, Lab Mates, Private.
static java.lang.String	makeEditHistory(java.lang.String firstName, java.lang.String lastName, java.lang.String pastEditHistory) Makes an edit history entry.
static Feature[]	makeFeatures(java.lang.String[] stringFeatures) Use to make a default Feature[].
static int[]	parseView(javax.servlet.http.HttpServletRequest request) Parses a 12-49 type parameter named view to just the ints
static java.lang.String[]	splitConcat(java.lang.String concat) Safely splits a three item, colon delimited concat (ie 3: zyx:4-99: 235, 3999) into a String[3], OK to have internal colons provided no space follows the colon.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

IPPort

public static final java.lang.String IPPort

See Also:

Constant Field Values

fullPathToBlast

public static final java.lang.String fullPathToBlast

See Also:

Constant Field Values

filepath

public static final java.lang.String filepath

See Also:

Constant Field Values

demoUserId

public static final int demoUserId

See Also:

Constant Field Values

HTMLPath

public static final java.lang.String HTMLPath

See Also:

Constant Field Values

smtpHostName

public static final java.lang.String smtpHostName

See Also:

Constant Field Values

smtpUser

public static final java.lang.String smtpUser

See Also:

Constant Field Values

smtpPassword

public static final java.lang.String smtpPassword

See Also:

Constant Field Values

contactEmail

public static final java.lang.String contactEmail

Who do you call?

See Also:

Constant Field Values

SMTPAccount

public static final java.lang.String SMTPAccount

SMTP account to use for emailing

See Also:

Constant Field Values

maxFileSize

public static final int maxFileSize

Maximum allowable file size for upload

See Also:

Constant Field Values

Constructor Detail

Util

public Util()

Method Detail

fetchUserBean

public static UserBean fetchUserBean(javax.servlet.http.HttpServletRequest request,
                                     javax.servlet.http.HttpServletResponse response)

Sets a guest user bean if there is none.

getVisibilities

public static java.lang.String[] getVisibilities(UserBean userBean,
                                                 DBUtil bioRoot)

If user is part of an organization, it returns WWW, orgName, Lab Mates, Private. Otherwise it just returns the standard three.

parseView

public static int[] parseView(javax.servlet.http.HttpServletRequest request)

Parses a 12-49 type parameter named view to just the ints

getViewLine

public static java.lang.String getViewLine(ReagentBean[] reagentBeans,
                                           int[] inView,
                                           Preference reagentPreference,
                                           java.lang.String reagentType)

Returns hot linked html for 1-30 31-60 ... sets of reagent beans That in view is left to be body font size others are Reaagent type = Oligo, Plasmid, Strain; needed for setting hot link.

makeFeatures

public static Feature[] makeFeatures(java.lang.String[] stringFeatures)

Use to make a default Feature[]. Name: ColumnName (or none): order: visibility

fetchTableColumnRow

public static java.lang.String fetchTableColumnRow(Preference pref,
                                                   java.lang.String reagentType)

Returns a table header row using the Preferece obj and a reagentType: Oligo, Plasmid, Strain...

buildHTMLTableRows

public static java.lang.String buildHTMLTableRows(java.lang.String[] ids,
                                                  java.lang.String[][] columnRows,
                                                  boolean checked)

Build HTML table rows.

splitConcat

public static java.lang.String[] splitConcat(java.lang.String concat)

Safely splits a three item, colon delimited concat (ie 3: zyx:4-99: 235, 3999) into a String[3], OK to have internal colons provided no space follows the colon.

makeEditHistory

public static java.lang.String makeEditHistory(java.lang.String firstName,
                                               java.lang.String lastName,
                                               java.lang.String pastEditHistory)

Makes an edit history entry. firstName lastName (date). If this is a new entry set past EditHistory to null or "".