bioroot
Class ReagentBean

java.lang.Object
  bioroot.ReagentBean

All Implemented Interfaces:

java.lang.Comparable

Direct Known Subclasses:

AntibodyBean, OligoBean, PlasmidBean, StrainBean

public class ReagentBean

extends java.lang.Object

implements java.lang.Comparable

Author:

nix Container for holding comon information about a reagent (oligo, plasmid, strain, antibody...)

Field Summary

static org.apache.log4j.Logger

log

Constructor Summary

ReagentBean()

Method Summary

void	appendMessages(java.lang.String string)
boolean	canModifyAll(UserBean user)
boolean	canModifyCommon(UserBean user)
boolean	canView(UserBean user, DBUtil bioRoot)
int	compareTo(java.lang.Object obj)
java.lang.String	getAlias()
java.lang.String	getAvailability()
java.lang.String	getComments()
java.lang.String	getEditHistory()
java.lang.String	getGenericVisibility() Returns one of the standard visibility settings (WWW, Lab mates, Private) or the generic 'Organization'
int	getId()
int	getLabGroupId()
java.lang.String	getLabGroupName(DBUtil bioRoot)
java.lang.String	getLastUser()
java.lang.String	getLocation()
java.lang.String	getMessages()
java.lang.String	getName()
java.lang.String	getNotes()
java.lang.String	getOrderBy()
int	getOrganismId()
java.lang.String	getOrganismName(DBUtil bioRoot)
Organization	getOrganization(DBUtil bioRoot)
int	getOwnerId()
java.lang.String	getOwnerName(DBUtil bioRoot)
java.lang.String	getReference()
java.lang.String	getVisibility(DBUtil bioRoot)
boolean	isComplete()
boolean	isReagentNameUnique(DBUtil bioRoot, java.lang.String tableName) checks to see if oligo name is unique within labgroup, assumes a connection has been made
void	loadReagentBean(java.sql.ResultSet results)
void	setAlias(java.lang.String string)
void	setAvailability(java.lang.String string)
void	setComments(java.lang.String comments)
void	setComplete(boolean complete)
void	setEditHistory(java.lang.String editHistory)
void	setId(int id)
void	setLabGroupId(int labGroupId)
void	setLabGroupName(java.lang.String labGroupName)
void	setLastUser(java.lang.String lastUser)
void	setLocation(java.lang.String string)
void	setMessages(java.lang.String string)
void	setName(java.lang.String string)
void	setNotes(java.lang.String string)
void	setOrderBy(java.lang.String orderBy)
void	setOrganismId(int i)
void	setOrganismName(java.lang.String organismName)
void	setOwnerId(int i)
void	setOwnerName(java.lang.String ownerName)
void	setReference(java.lang.String string)
void	setVisibility(java.lang.String string)
boolean	updateCommonAccessFields(DBUtil bioRoot, java.lang.String reagentType) Just updates fields that are accessible by all lab group memebers, lastUser, comments given a reagent type: Oligo or Plasmid.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

public static org.apache.log4j.Logger log

Constructor Detail

ReagentBean

public ReagentBean()

Method Detail

compareTo

public int compareTo(java.lang.Object obj)

Specified by:

compareTo in interface java.lang.Comparable

loadReagentBean

public void loadReagentBean(java.sql.ResultSet results)

updateCommonAccessFields

public boolean updateCommonAccessFields(DBUtil bioRoot,
                                        java.lang.String reagentType)

Just updates fields that are accessible by all lab group memebers, lastUser, comments given a reagent type: Oligo or Plasmid. Strain overrides this method.

isReagentNameUnique

public boolean isReagentNameUnique(DBUtil bioRoot,
                                   java.lang.String tableName)

checks to see if oligo name is unique within labgroup, assumes a connection has been made

canView

public boolean canView(UserBean user,
                       DBUtil bioRoot)

canModifyAll

public boolean canModifyAll(UserBean user)

canModifyCommon

public boolean canModifyCommon(UserBean user)

getVisibility

public java.lang.String getVisibility(DBUtil bioRoot)

getGenericVisibility

public java.lang.String getGenericVisibility()

Returns one of the standard visibility settings (WWW, Lab mates, Private) or the generic 'Organization'

getLabGroupName

public java.lang.String getLabGroupName(DBUtil bioRoot)

getOwnerName

public java.lang.String getOwnerName(DBUtil bioRoot)

getOrganismName

public java.lang.String getOrganismName(DBUtil bioRoot)

getOrganismId

public int getOrganismId()

getAlias

public java.lang.String getAlias()

getAvailability

public java.lang.String getAvailability()

getEditHistory

public java.lang.String getEditHistory()

getId

public int getId()

getLabGroupId

public int getLabGroupId()

getLocation

public java.lang.String getLocation()

getMessages

public java.lang.String getMessages()

getName

public java.lang.String getName()

getNotes

public java.lang.String getNotes()

getOwnerId

public int getOwnerId()

isComplete

public boolean isComplete()

getOrderBy

public java.lang.String getOrderBy()

setAlias

public void setAlias(java.lang.String string)

setAvailability

public void setAvailability(java.lang.String string)

setLocation

public void setLocation(java.lang.String string)

setMessages

public void setMessages(java.lang.String string)

appendMessages

public void appendMessages(java.lang.String string)

setName

public void setName(java.lang.String string)

setNotes

public void setNotes(java.lang.String string)

setOrganismId

public void setOrganismId(int i)

setOwnerId

public void setOwnerId(int i)

setVisibility

public void setVisibility(java.lang.String string)

setComplete

public void setComplete(boolean complete)

setEditHistory

public void setEditHistory(java.lang.String editHistory)

setId

public void setId(int id)

setLabGroupId

public void setLabGroupId(int labGroupId)

setOrderBy

public void setOrderBy(java.lang.String orderBy)

setLabGroupName

public void setLabGroupName(java.lang.String labGroupName)

setOrganismName

public void setOrganismName(java.lang.String organismName)

setOwnerName

public void setOwnerName(java.lang.String ownerName)

getComments

public java.lang.String getComments()

setComments

public void setComments(java.lang.String comments)

getLastUser

public java.lang.String getLastUser()

setLastUser

public void setLastUser(java.lang.String lastUser)

getReference

public java.lang.String getReference()

setReference

public void setReference(java.lang.String string)

getOrganization

public Organization getOrganization(DBUtil bioRoot)