Uses of Class
trans.roc.Positive

Packages that use Positive

trans.graphics	For graphically representing '.cel' files and intervals.
trans.roc	For manipulating the BAC dmel spike in data and generating ROC curves.

Uses of Positive in trans.graphics

Methods in trans.graphics with parameters of type Positive

static int	AggregatePlots.maxLength(Positive[] regions) Finds max length of the Region[], stop-start+1
static void	AggregatePlots.loadRegions(Sgr sgr, Positive[] pos) Checks to see if an sgr object is in the positives, if so, adds the sgr object to the positive.

Uses of Positive in trans.roc

Methods in trans.roc that return Positive

static Positive[]	Positive.filter(int bpOffSetEnds, Positive[] pos) Adds the bpOffSetEnds to the end of each Positive.
static Positive[]	ParseSgrsForParticularRegions.parseRegionFile(java.io.File picksFile)

Methods in trans.roc with parameters of type Positive

static int	SgrBacCounter.positive(Positive[] pos, Sgr sgr) Checks to see if an sgr object is one of the positives, if not returns -1, otherwise returns index number.
static Positive[]	Positive.filter(int bpOffSetEnds, Positive[] pos) Adds the bpOffSetEnds to the end of each Positive.
static int	ParseSgrsForParticularRegions.inRegion(Sgr sgr, Positive[] pos) Checks to see if an sgr object is in one of the positives, if not returns -1, otherwise returns index number.
static void	ParseSgrsForParticularRegions.loadRegions(Sgr sgr, Positive[] pos) Checks to see if an sgr object is in the positives, if so, adds the sgr object to the positive.
void	ParseBarsForParticularRegions.makeRandom(Positive region, double numberScores) Takes a Positive and finds 1000 chrom, length, gc, and number scores matched random regions.
static int	ParseBarsForParticularRegions.inRegion(Sgr sgr, Positive[] pos) Checks to see if an sgr object is in one of the positives, if not returns -1, otherwise returns index number.
void	ParseBarsForParticularRegions.loadRegion(Positive region) Loads a Positive with Gr objects.
static int	MethodTester.positive(Positive[] pos, Sgr sgr) Checks to see if an sgr object is one of the positives, if not returns -1, otherwise returns index number.