trans.roc
Class Sgr

java.lang.Object
  trans.roc.Sgr

All Implemented Interfaces:

java.io.Serializable

public class Sgr

extends java.lang.Object

implements java.io.Serializable

Sgr line container.

See Also:

Serialized Form

Constructor Summary

Sgr(java.lang.String line)

Sgr(java.lang.String line, java.lang.String chromosome)

Method Summary

java.lang.String	getChromosome()
int	getPosition()
double	getScore()
static java.util.ArrayList	loadSgrFile(java.io.File sgrFile) Loads an xxx.sgr.zip file into an ArrayList of Sgr
void	setScore(double score)
static Sgr[][]	splitByChromosome(Sgr[] sgrs) Splits a Sgr[] containing many chromosome lines to a Sgr[chrom][lines].
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Sgr

public Sgr(java.lang.String line)

Sgr

public Sgr(java.lang.String line,
           java.lang.String chromosome)

Method Detail

splitByChromosome

public static Sgr[][] splitByChromosome(Sgr[] sgrs)

Splits a Sgr[] containing many chromosome lines to a Sgr[chrom][lines]. Assumes the Sgr[] is sorted by chromosome!

loadSgrFile

public static java.util.ArrayList loadSgrFile(java.io.File sgrFile)

Loads an xxx.sgr.zip file into an ArrayList of Sgr

getChromosome

public java.lang.String getChromosome()

getPosition

public int getPosition()

getScore

public double getScore()

toString

public java.lang.String toString()

setScore

public void setScore(double score)