trans.roc
Class ParseSgrsForParticularRegions

java.lang.Object
  trans.roc.ParseSgrsForParticularRegions

public class ParseSgrsForParticularRegions

extends java.lang.Object

Returns oligo values that overlap particular regions.

Constructor Summary

ParseSgrsForParticularRegions(java.lang.String[] args)

Method Summary

static int	inRegion(Sgr sgr, Positive[] pos) Checks to see if an sgr object is in one of the positives, if not returns -1, otherwise returns index number.
static void	loadRegions(Sgr sgr, Positive[] pos) Checks to see if an sgr object is in the positives, if so, adds the sgr object to the positive.
static void	main(java.lang.String[] args)
static Positive[]	parseRegionFile(java.io.File picksFile)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ParseSgrsForParticularRegions

public ParseSgrsForParticularRegions(java.lang.String[] args)

Method Detail

inRegion

public static int inRegion(Sgr sgr,
                           Positive[] pos)

Checks to see if an sgr object is in one of the positives, if not returns -1, otherwise returns index number.

loadRegions

public static void loadRegions(Sgr sgr,
                               Positive[] pos)

Checks to see if an sgr object is in the positives, if so, adds the sgr object to the positive.

parseRegionFile

public static Positive[] parseRegionFile(java.io.File picksFile)

main

public static void main(java.lang.String[] args)