trans.main
Class IntervalFilter

java.lang.Object
  trans.main.IntervalFilter

public class IntervalFilter

extends java.lang.Object

Sorts an Interval[] into two groups, those that pass or fail a variety of filters.

Constructor Summary

IntervalFilter(java.lang.String[] args)

Method Summary

void	deleteIntersectingIntervals()
void	deleteSpecificIntervals()
void	filterByStndDev()
void	filterSubWindow() Filters by the median ratio of the sub window
void	filterWindowScore()
static void	main(java.lang.String[] args)
static void	printDocs()
void	processArgs(java.lang.String[] args) This method will process each argument and assign any new varibles

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IntervalFilter

public IntervalFilter(java.lang.String[] args)

Method Detail

deleteSpecificIntervals

public void deleteSpecificIntervals()

deleteIntersectingIntervals

public void deleteIntersectingIntervals()

filterWindowScore

public void filterWindowScore()

filterSubWindow

public void filterSubWindow()

Filters by the median ratio of the sub window

filterByStndDev

public void filterByStndDev()

printDocs

public static void printDocs()

processArgs

public void processArgs(java.lang.String[] args)

This method will process each argument and assign any new varibles

main

public static void main(java.lang.String[] args)