trans.main
Class IntervalComparator

java.lang.Object
  trans.main.IntervalComparator

All Implemented Interfaces:

java.util.Comparator

public class IntervalComparator

extends java.lang.Object

implements java.util.Comparator

Class to help sort an array of Interval[] by chromosome, start position, length shortest first.

Constructor Summary

IntervalComparator()

Method Summary

int	compare(java.lang.Object arg0, java.lang.Object arg1) Sorts by chromosome-> start oligo position -> length, shortest first

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals

Constructor Detail

IntervalComparator

public IntervalComparator()

Method Detail

compare

public int compare(java.lang.Object arg0,
                   java.lang.Object arg1)

Sorts by chromosome-> start oligo position -> length, shortest first

Specified by:

compare in interface java.util.Comparator