trans.main
Class ScanGenes

java.lang.Object
  trans.main.ScanGenes

public class ScanGenes

extends java.lang.Object

Given a list of genes and their exons extracts the associated intensities.

Constructor Summary

ScanGenes(java.lang.String[] args)

Method Summary

int[][]	convertToIndexPositions(ExonIntron[] exons) Converts an array of ExonIntron to an int[exon number][start index in bp positions array, stop index]
static void	main(java.lang.String[] args)
static void	printDocs()
void	processArgs(java.lang.String[] args) This method will process each argument and assign new varibles

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ScanGenes

public ScanGenes(java.lang.String[] args)

Method Detail

convertToIndexPositions

public int[][] convertToIndexPositions(ExonIntron[] exons)

Converts an array of ExonIntron to an int[exon number][start index in bp positions array, stop index]

main

public static void main(java.lang.String[] args)

processArgs

public void processArgs(java.lang.String[] args)

This method will process each argument and assign new varibles

printDocs

public static void printDocs()