trans.main
Class MultiSGRPrinter

java.lang.Object
  trans.main.MultiSGRPrinter

public class MultiSGRPrinter

extends java.lang.Object

Prints a multi sgr file (chr position val1, val2, val3, ....)

Constructor Summary

MultiSGRPrinter(java.lang.String[] args)

Method Summary

static boolean	checkSizes(float[][] replicasValues) Checks to see if the number of values are the same given float[replica#][values].
static float[][]	fetchIntensities(java.io.File[] directories, java.lang.String fileName) Fetches a float[] from each of the directories given a fileName.
static void	main(java.lang.String[] args)
static void	printDocs()
void	processArgs(java.lang.String[] args) This method will process each argument and assign new varibles

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MultiSGRPrinter

public MultiSGRPrinter(java.lang.String[] args)

Method Detail

main

public static void main(java.lang.String[] args)

processArgs

public void processArgs(java.lang.String[] args)

This method will process each argument and assign new varibles

printDocs

public static void printDocs()

fetchIntensities

public static float[][] fetchIntensities(java.io.File[] directories,
                                         java.lang.String fileName)

Fetches a float[] from each of the directories given a fileName. Returns null if a file cannot be read or it is not a serialized float[].

Returns:

float[replicas][intensities]

checkSizes

public static boolean checkSizes(float[][] replicasValues)

Checks to see if the number of values are the same given float[replica#][values].