trans.main
Class LoadChipSetIntervalOligoInfo

java.lang.Object
  trans.main.LoadChipSetIntervalOligoInfo

public class LoadChipSetIntervalOligoInfo

extends java.lang.Object

Loads arrays of Interval[] with oligo and sequence information needed for other applications. Uses chromosome specific files.

Constructor Summary

LoadChipSetIntervalOligoInfo(java.lang.String[] args)

Method Summary

static float[]	loadIntensities(java.io.File directory, java.lang.String chrom) Loads the oligo intensities.
void	loadOligoPositions(java.lang.String chrom) Loads the oligo positions.
static void	main(java.lang.String[] args)
static void	printDocs()
void	processArgs(java.lang.String[] args) This method will process each argument and assign new varibles

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LoadChipSetIntervalOligoInfo

public LoadChipSetIntervalOligoInfo(java.lang.String[] args)

Method Detail

main

public static void main(java.lang.String[] args)

processArgs

public void processArgs(java.lang.String[] args)

This method will process each argument and assign new varibles

printDocs

public static void printDocs()

loadOligoPositions

public void loadOligoPositions(java.lang.String chrom)

Loads the oligo positions.

loadIntensities

public static float[] loadIntensities(java.io.File directory,
                                      java.lang.String chrom)

Loads the oligo intensities.