trans.main
Class FDRWindowConverter

java.lang.Object
  trans.main.FDRWindowConverter

public class FDRWindowConverter

extends java.lang.Object

Associates an empirical FDR estimate with each window provided a mock IP was performed.

Constructor Summary

FDRWindowConverter(java.lang.String[] args)

Method Summary

static void	main(java.lang.String[] args)
static void	printDocs()
void	processArgs(java.lang.String[] args) This method will process each argument and assign new varibles
void	setScoreAndSort(Window[] w)
int	thresholdWindows(Window[] w, double score, int startingIndex)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FDRWindowConverter

public FDRWindowConverter(java.lang.String[] args)

Method Detail

thresholdWindows

public int thresholdWindows(Window[] w,
                            double score,
                            int startingIndex)

setScoreAndSort

public void setScoreAndSort(Window[] w)

processArgs

public void processArgs(java.lang.String[] args)

This method will process each argument and assign new varibles

printDocs

public static void printDocs()

main

public static void main(java.lang.String[] args)