trans.main
Class BindingPeak

java.lang.Object
  trans.main.BindingPeak

All Implemented Interfaces:

java.io.Serializable

public class BindingPeak

extends java.lang.Object

implements java.io.Serializable

Holds information about a binding peak within an interval.

See Also:

Serialized Form

Constructor Summary

BindingPeak(int firstPeakIndex, int leftFlankingIndex, int rightFlankingIndex, int peakBP, double score)

Method Summary

int	getFirstPeakIndex()
int	getLeftFlankingIndex()
int	getPeakBP()
int	getRightFlankingIndex()
double	getScore()
java.lang.String	toString(Oligo[] oligos, int oligoLength) Score, Left, Peak, Right

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BindingPeak

public BindingPeak(int firstPeakIndex,
                   int leftFlankingIndex,
                   int rightFlankingIndex,
                   int peakBP,
                   double score)

Method Detail

toString

public java.lang.String toString(Oligo[] oligos,
                                 int oligoLength)

Score, Left, Peak, Right

getFirstPeakIndex

public int getFirstPeakIndex()

getLeftFlankingIndex

public int getLeftFlankingIndex()

getPeakBP

public int getPeakBP()

getRightFlankingIndex

public int getRightFlankingIndex()

getScore

public double getScore()