Package trans.bkgrnd

For examining background GC content and ratio bias.

See:
Description

Class Summary

BackGroundOligo	A control oligo spotted multiple times on the array.
CalcBkgrndRatios	Calculates a correlation coefficient between ratio scores and tm or gc for a set of CelMapper converted cel/bpmap files.
CalculateBackgroundStats	For each CelMapper converted cel/bpmap files, this calculates a correlation coeff between pm:mm, pm:tm, pm:gc.
LoadedOligo	BPMap line contain gc and tm calculations.
MapControlIntensities	Loads a bpmap file with oligo intensity measurements from multiple '.cel' files after median scaling to 50.

Package trans.bkgrnd Description

For examining background GC content and ratio bias.