trans.bkgrnd
Class CalcBkgrndRatios

java.lang.Object
  trans.bkgrnd.CalcBkgrndRatios

public class CalcBkgrndRatios

extends java.lang.Object

Calculates a correlation coefficient between ratio scores and tm or gc for a set of CelMapper converted cel/bpmap files. This is a huge memory pig.

Constructor Summary

CalcBkgrndRatios(java.lang.String[] args)

Method Summary

static LoadedOligo[]	fetchLoadedOligos(java.io.File loadedOligoFile)
static void	main(java.lang.String[] args)
static void	medianScale(LoadedOligo[] los)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CalcBkgrndRatios

public CalcBkgrndRatios(java.lang.String[] args)

Method Detail

medianScale

public static void medianScale(LoadedOligo[] los)

fetchLoadedOligos

public static LoadedOligo[] fetchLoadedOligos(java.io.File loadedOligoFile)

main

public static void main(java.lang.String[] args)