Package meme

Wrapper for meme tweaked for processing multiple rounds of SELEX oligos.

See:
Description

Class Summary

MemeMotif	This contains info generated from parsing a meme report, each found motif is represented by this class.
MemeParser	Parses meme output into MemeMotif objects and stores some generalize info re the meme run.
MemeR	Main, wRapper for meme geared toward processing multiple rounds of selex data.
MemeResults	Holds the results from various parts of MemeR.
MotifHit	Holds data related to a particular match of a matrix to a sequence.
MotifScanner	MotifScanner objects are used to scan sequences with a particular weight matrix and generate an array of MotifHit objects.
MotifSearchResult	Holds the results of searching a multi-fasta seq file with a particular motif.
UtilMeme	A catch all class to hold static methods and parameters set by different classes associated by MemeR.

Package meme Description

Wrapper for meme tweaked for processing multiple rounds of SELEX oligos.