meme
Class MotifSearchResult

java.lang.Object
  meme.MotifSearchResult

All Implemented Interfaces:

java.lang.Comparable

public class MotifSearchResult

extends java.lang.Object

implements java.lang.Comparable

Holds the results of searching a multi-fasta seq file with a particular motif.

Constructor Summary

MotifSearchResult(MemeMotif mm, java.lang.String file, int numberOfSeqsSearched)

Method Summary

int	compareTo(java.lang.Object otherObject)
double	getAddOneLLPSPMCutOffScore()
int	getFileNumber()
java.util.ArrayList	getHitsAddOneLLPSPM()
java.util.ArrayList	getHitsMemeLLPSPM()
double	getMemeLLPSPMCutOffScore()
MemeMotif	getMemeMotif()
double	getMotifSig()
int	getNumHitsAddOneLLPSPM()
int	getNumHitsMemeLLPSPM()
int	getnumSeqsSearched()
java.lang.String	getSearchedSeqFile()
void	setAddOneLLPSPMCutOffScore(double data)
void	setFileNumber(int data)
void	setHitsAddOneLLPSPM(java.util.ArrayList data)
void	setHitsMemeLLPSPM(java.util.ArrayList data)
void	setMemeLLPSPMCutOffScore(double data)
void	setMotifSig(double data)
void	setNumHitsAddOneLLPSPM(int data)
void	setNumHitsMemeLLPSPM(int data)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MotifSearchResult

public MotifSearchResult(MemeMotif mm,
                         java.lang.String file,
                         int numberOfSeqsSearched)

Method Detail

compareTo

public int compareTo(java.lang.Object otherObject)

Specified by:

compareTo in interface java.lang.Comparable

setMotifSig

public void setMotifSig(double data)

setFileNumber

public void setFileNumber(int data)

setMemeLLPSPMCutOffScore

public void setMemeLLPSPMCutOffScore(double data)

setAddOneLLPSPMCutOffScore

public void setAddOneLLPSPMCutOffScore(double data)

setHitsMemeLLPSPM

public void setHitsMemeLLPSPM(java.util.ArrayList data)

setHitsAddOneLLPSPM

public void setHitsAddOneLLPSPM(java.util.ArrayList data)

setNumHitsMemeLLPSPM

public void setNumHitsMemeLLPSPM(int data)

setNumHitsAddOneLLPSPM

public void setNumHitsAddOneLLPSPM(int data)

getFileNumber

public int getFileNumber()

getMotifSig

public double getMotifSig()

getMemeMotif

public MemeMotif getMemeMotif()

getMemeLLPSPMCutOffScore

public double getMemeLLPSPMCutOffScore()

getAddOneLLPSPMCutOffScore

public double getAddOneLLPSPMCutOffScore()

getSearchedSeqFile

public java.lang.String getSearchedSeqFile()

getHitsMemeLLPSPM

public java.util.ArrayList getHitsMemeLLPSPM()

getHitsAddOneLLPSPM

public java.util.ArrayList getHitsAddOneLLPSPM()

getNumHitsMemeLLPSPM

public int getNumHitsMemeLLPSPM()

getNumHitsAddOneLLPSPM

public int getNumHitsAddOneLLPSPM()

getnumSeqsSearched

public int getnumSeqsSearched()