meme
Class MotifHit

java.lang.Object
  meme.MotifHit

All Implemented Interfaces:

java.lang.Comparable

public class MotifHit

extends java.lang.Object

implements java.lang.Comparable

Holds data related to a particular match of a matrix to a sequence.

Constructor Summary

MotifHit(int st, int sp, double sc, java.lang.String s, int o)

Method Summary

int	compareTo(java.lang.Object otherObject)
int	getOrientation()
double	getScore()
java.lang.String	getSeq()
int	getStart()
int	getStop()
void	setScore(double score)
void	setSeq(java.lang.String seq)
void	setStart(int start)
void	setStop(int stop)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MotifHit

public MotifHit(int st,
                int sp,
                double sc,
                java.lang.String s,
                int o)

Method Detail

compareTo

public int compareTo(java.lang.Object otherObject)

Specified by:

compareTo in interface java.lang.Comparable

toString

public java.lang.String toString()

getScore

public double getScore()

setScore

public void setScore(double score)

getSeq

public java.lang.String getSeq()

setSeq

public void setSeq(java.lang.String seq)

getStart

public int getStart()

setStart

public void setStart(int start)

getStop

public int getStop()

setStop

public void setStop(int stop)

getOrientation

public int getOrientation()