Uses of Class
meme.MotifHit

Packages that use MotifHit

meme	Wrapper for meme tweaked for processing multiple rounds of SELEX oligos.

Uses of MotifHit in meme

Methods in meme that return MotifHit

MotifHit[]

MotifScanner.scoreSequence(double cutOff, java.lang.String seq) Returns an array of MotifHits that are > or = to the loglikelihood cutOff.

Methods in meme with parameters of type MotifHit

static int

MotifScanner.calculateMaxCluster(MotifHit[] hits, int window) Calculates the maximum number of hits that occur within a given window size.