Uses of Class
gata.main.AnnoSpecParams

Packages that use AnnoSpecParams

gata.geneGlyphs	For representing annotation, scale bars, and generic tracks.
gata.main	Main app, utility, and params for GATAPlotter.
gata.menu	GATAPlotter menus, panels, and frames.
gata.plotter	GATAPlotter primary panel, sliders, tools, and conservation panels.

Uses of AnnoSpecParams in gata.geneGlyphs

Constructors in gata.geneGlyphs with parameters of type AnnoSpecParams

TransGrpGlyph(TransGroup transGrp, GATAParams gataParams, AnnoSpecParams annoParams)

ScaleBar(AnnoSpecParams annoParams, GATAParams gataParams)

GlyphPanel(AnnoSpecParams annoParams, GATAParams gataParams)

GeneRepGlyph(GeneRep geneRep, GATAParams gataParams, AnnoSpecParams annoParams)

Annotation(AnnoSpecParams annoParams, GATAParams gataParams)

Uses of AnnoSpecParams in gata.main

Methods in gata.main that return AnnoSpecParams

AnnoSpecParams	GATAParams.getCompAnnoSpecParams()
AnnoSpecParams	GATAParams.getRefAnnoSpecParams()

Methods in gata.main with parameters of type AnnoSpecParams

void	PlotterPreferences.setAnnoScaleDefaults(AnnoSpecParams asp)
void	GATAPlotter.makeAnnotation(AnnoSpecParams annoParams)
void	GATAParams.setCompAnnoSpecParams(AnnoSpecParams params)
void	GATAParams.setRefAnnoSpecParams(AnnoSpecParams params)

Uses of AnnoSpecParams in gata.menu

Methods in gata.menu with parameters of type AnnoSpecParams

void	GATAFrame.completeAnnotationMenu(boolean gffRefPres, boolean gffCompPres, AnnoSpecParams refParams, AnnoSpecParams compParams) must be called after the initial creation when the user has possibly loaded generic annotation
void	GATAFrame.reallyRedrawAnnotationPanel(AnnoSpecParams asp)

Uses of AnnoSpecParams in gata.plotter

Methods in gata.plotter with parameters of type AnnoSpecParams

void	AlignPanel.redrawGlyphPanel(AnnoSpecParams asp)