gata.geneGlyphs
Class GeneRepGlyph

java.lang.Object
  gata.geneGlyphs.GeneRepGlyph

public class GeneRepGlyph

extends java.lang.Object

Author:

Nix Shape representation for a GeneRep- the DNA component of genomic annotation.

Constructor Summary

GeneRepGlyph(GeneRep geneRep, GATAParams gataParams, AnnoSpecParams annoParams)

Method Summary

void	draw(double yCoordinate)
void	drawTransGrpGlyphs()
java.awt.geom.Rectangle2D.Double	getBoundingBox()
int	getEnd()
double	getNonOverlapYCoor()
int	getStart()
void	setTransGrpGlyphs(java.util.ArrayList transGrpGlyphs)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GeneRepGlyph

public GeneRepGlyph(GeneRep geneRep,
                    GATAParams gataParams,
                    AnnoSpecParams annoParams)

Method Detail

toString

public java.lang.String toString()

draw

public void draw(double yCoordinate)

drawTransGrpGlyphs

public void drawTransGrpGlyphs()

setTransGrpGlyphs

public void setTransGrpGlyphs(java.util.ArrayList transGrpGlyphs)

getNonOverlapYCoor

public double getNonOverlapYCoor()

getBoundingBox

public java.awt.geom.Rectangle2D.Double getBoundingBox()

getEnd

public int getEnd()

getStart

public int getStart()