util.bio.annotation
Class TransGroup

java.lang.Object
  util.bio.annotation.TransGroup

All Implemented Interfaces:

java.io.Serializable

public class TransGroup

extends java.lang.Object

implements java.io.Serializable

A TransGroup describes a product derived from a GeneGroup contains one transcript, possibly a translation, and a possibly a set of exons.

See Also:

Serialized Form

Constructor Summary

TransGroup(Transcript transcript, Translation translation, ExonIntron[] exons)

Method Summary

ExonIntron[]	getExons()
int[][]	getExtractedExons()
Transcript	getTranscript()
Translation	getTranslation()
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

TransGroup

public TransGroup(Transcript transcript,
                  Translation translation,
                  ExonIntron[] exons)

Method Detail

toString

public java.lang.String toString()

getExons

public ExonIntron[] getExons()

getTranscript

public Transcript getTranscript()

getTranslation

public Translation getTranslation()

getExtractedExons

public int[][] getExtractedExons()