Uses of Class
util.bio.annotation.TransGroup

Packages that use TransGroup

gata.geneGlyphs	For representing annotation, scale bars, and generic tracks.
util.bio.annotation	For representing gene annotation.

Uses of TransGroup in gata.geneGlyphs

Constructors in gata.geneGlyphs with parameters of type TransGroup

TransGrpGlyph(TransGroup transGrp, GATAParams gataParams, AnnoSpecParams annoParams)

Uses of TransGroup in util.bio.annotation

Methods in util.bio.annotation that return TransGroup

TransGroup[]

GeneGroup.getTransGrps()

Methods in util.bio.annotation with parameters of type TransGroup

void	Translation.setTransGrp(TransGroup ref) Sets TransGroup ref but also fires the makeSegments method

Constructors in util.bio.annotation with parameters of type TransGroup

GeneRep(TransGroup[] transGrps, GeneGroup geneGrpRef)

GeneGroup(java.lang.String name, java.lang.String chromosome, int start, int end, java.lang.String type, TransGroup[] transGrps, int orientation, java.lang.String attributes)