Package util.bio.annotation

For representing gene annotation.

See:
Description

Class Summary

Coordinates	Base class for holding info about a genomic coordinate.
ExonIntron	ExonIntron info.
ExportIntergenicRegions
ExportIntronicRegions
GeneGroup	A GeneGroup is the top organizing level of a "Gene".
GeneRep	A GeneRep resentation contains a genomic sequence designating a gene broken into various segments.
GenericFeature	Class to hold user defined gff items like CRMs, enhancers, unpublished single track notation.
StartEnd	Simple start end object for sorting.
Transcript	Transcript relevant information, mRNA.
TransGroup	A TransGroup describes a product derived from a GeneGroup contains one transcript, possibly a translation, and a possibly a set of exons.
Translation	Translation specific information, protein but referenced with genomic coordinates thus some bits code for protein, some don't physically exist.

Package util.bio.annotation Description

For representing gene annotation.