|
|||||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |
See:
Description
Class Summary | |
ArrayPrinter | Prints serialized arrays to screen. |
ConvertFasta2GCBoolean | Converts fasta file(s) into serialized boolean[]s where every base g or c is true all others false. |
Correlate | Calculates a Pearson correlation coefficient between all pairs of serializae float[]. |
Delme2 | |
FileJoiner | Joins text files into a single file, avoiding line concatenations. |
FileSplitter | Application for splitting a large text file into smaller files given a maximum number of lines. |
FileTrimmer | Removes empty lines from text files in a given directory. |
Flash | |
GeneNameCounter | Counts the frequency of words in the master list, then assigns these frequencies to words in the test list. |
HouseBean | |
IntersectLists | Compares two lists of words for intersection. |
JQSub | Fires command lines on clusters through qsub. |
MakeBioTools | Utility app to pull classes into folders and extract menus to html. |
ParseMLSHTML | |
PrintSelectColumns | Prints out select columns from a tab delimited file, skips lines, appends words, etc. |
RenameRWSResults | Takes the output of RocWindowScanner from the cluster and renames the file |
ScatterDrawFrame | Helper class for ScatterPlot , the frame. |
ScatterDrawPanel | Helper class for ScatterPlot , the guts of drawing the scatter plot. |
ScatterPlot | Draws a simple scatter plot and calculates a Pearson correlation coefficient for two serialized int[] or float[] arrays. |
ScoreChromosomes | Scores chromosomes for the presence of transcription factor binding sites. |
ScoreSequences | Scores sequences for the presence of transcription factor binding sites. |
SubtractOneFromLastColumn | Subtracts 1 from the last column assuming it's an integer. |
TASSignalChromFileSplitter | |
TextParser | For parsing a text file into a tab delimited file, working template. |
WindowScoreSmoother | Slides a window across an array of numbers averaging the scores. |
Scripts for printing arrays, manipulating files, scatter plots...
|
|||||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |