trans.roc
Class RocWindow

java.lang.Object
  trans.roc.RocWindow

All Implemented Interfaces:

java.lang.Comparable, java.io.Serializable

public class RocWindow

extends java.lang.Object

implements java.lang.Comparable, java.io.Serializable

For holding information about a region for ROC analysis.

See Also:

Serialized Form

Constructor Summary

RocWindow(java.lang.String chromosome, int start, int end, double score)

Method Summary

int	compareTo(java.lang.Object obj)
java.lang.String	getChromosome()
int	getEnd()
int	getMiddle()
double	getScore()
int	getStart()
int	getType()
boolean	intersects(RocWindow other)
static void	printSGRWindows(RocWindow[] w)
void	setChromosome(java.lang.String chromosome)
void	setEnd(int end)
void	setMiddle(int middle)
void	setScore(double score)
void	setStart(int start)
void	setType(int type)
java.lang.String	simpleSummaryLine() Returns a binding region line, tab delimited: chrom, start, end, score

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RocWindow

public RocWindow(java.lang.String chromosome,
                 int start,
                 int end,
                 double score)

Method Detail

compareTo

public int compareTo(java.lang.Object obj)

Specified by:

compareTo in interface java.lang.Comparable

intersects

public boolean intersects(RocWindow other)

simpleSummaryLine

public java.lang.String simpleSummaryLine()

Returns a binding region line, tab delimited: chrom, start, end, score

printSGRWindows

public static void printSGRWindows(RocWindow[] w)

getChromosome

public java.lang.String getChromosome()

setChromosome

public void setChromosome(java.lang.String chromosome)

getEnd

public int getEnd()

setEnd

public void setEnd(int end)

getMiddle

public int getMiddle()

setMiddle

public void setMiddle(int middle)

getScore

public double getScore()

setScore

public void setScore(double score)

getStart

public int getStart()

setStart

public void setStart(int start)

getType

public int getType()

setType

public void setType(int type)