Uses of Class
trans.main.SubWindow

Packages that use SubWindow
trans.main Principle classes and scripts used in TiMAT2 analysis. 
 

Uses of SubWindow in trans.main
 

Methods in trans.main that return SubWindow
 SubWindow Interval.getBestSubWindow()
           
static SubWindow FindSubBindingRegions.findHighestScoringWindow(int[][] win, double[] t, double[] c)
          Returns a partially complete SubWindow.
 

Methods in trans.main with parameters of type SubWindow
static void IntervalGFFPrinter.gff(SubWindow sub, Interval i, java.lang.String name, java.lang.StringBuffer s)
          Appends a GFF3 line for a SubWindow.
 void Interval.setBestSubWindow(SubWindow bestSubWindow)