trans.main
Class FindSubBindingRegions

java.lang.Object
  trans.main.FindSubBindingRegions

public class FindSubBindingRegions

extends java.lang.Object

Finds the best sub window and binding peaks (using the PeakPicker) within each interval.

Constructor Summary

FindSubBindingRegions(java.lang.String[] args)

Method Summary

static SubWindow	findHighestScoringWindow(int[][] win, double[] t, double[] c) Returns a partially complete SubWindow.
static void	main(java.lang.String[] args)
static void	printDocs()
void	processArgs(java.lang.String[] args) This method will process each argument and assign new varibles

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FindSubBindingRegions

public FindSubBindingRegions(java.lang.String[] args)

Method Detail

findHighestScoringWindow

public static SubWindow findHighestScoringWindow(int[][] win,
                                                 double[] t,
                                                 double[] c)

Returns a partially complete SubWindow.

main

public static void main(java.lang.String[] args)

processArgs

public void processArgs(java.lang.String[] args)

This method will process each argument and assign new varibles

printDocs

public static void printDocs()