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| Packages that use util.bio.parsers | |
| gata.aligner | For aligning and post processing DNA sequences using BLAST for subsequent import into GATAPlotter. |
| trans.main | Principle classes and scripts used in TiMAT2 analysis. |
| util.bio.annotation | For representing gene annotation. |
| util.bio.parsers | Parsers and extractors, fasta, quality, text, gff.... |
| Classes in util.bio.parsers used by gata.aligner | |
| MultiFastaParser
Extracts sequences and headers out of multi fasta files. |
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| Classes in util.bio.parsers used by trans.main | |
| UCSCGeneLine
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| Classes in util.bio.parsers used by util.bio.annotation | |
| UCSCGeneLine
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| Classes in util.bio.parsers used by util.bio.parsers | |
| UCSCGeneLine
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