util.bio.digest
Class Enzyme

java.lang.Object
  util.bio.digest.Enzyme

All Implemented Interfaces:

java.lang.Comparable

public class Enzyme

extends java.lang.Object

implements java.lang.Comparable

Restriction enzyme information.

Constructor Summary

Enzyme(java.lang.String aName, java.lang.String aRecogSeq, java.lang.String aMethSens, java.lang.String aAvail, java.lang.String aIsoz)

Method Summary

int	compareTo(java.lang.Object obj)
java.lang.String	getAvail()
int	getCutBottom()
int	getCutTop()
java.lang.String	getIso()
int	getLength()
java.lang.String	getMethSens()
java.lang.String	getName()
int	getNumberOfCuts()
char	getOverHangs()
java.lang.String	getRecogSeq()
java.lang.String	getRegEx()
java.lang.String	getStrippedRecogSeq()
int[]	getTopCuts()
void	printEnz()
void	setTopCuts(int[] topCuts)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Enzyme

public Enzyme(java.lang.String aName,
              java.lang.String aRecogSeq,
              java.lang.String aMethSens,
              java.lang.String aAvail,
              java.lang.String aIsoz)

Method Detail

getName

public java.lang.String getName()

getRecogSeq

public java.lang.String getRecogSeq()

getMethSens

public java.lang.String getMethSens()

getAvail

public java.lang.String getAvail()

getIso

public java.lang.String getIso()

getCutTop

public int getCutTop()

getCutBottom

public int getCutBottom()

getLength

public int getLength()

getRegEx

public java.lang.String getRegEx()

getOverHangs

public char getOverHangs()

printEnz

public void printEnz()

getTopCuts

public int[] getTopCuts()

setTopCuts

public void setTopCuts(int[] topCuts)

compareTo

public int compareTo(java.lang.Object obj)

Specified by:

compareTo in interface java.lang.Comparable

getNumberOfCuts

public int getNumberOfCuts()

getStrippedRecogSeq

public java.lang.String getStrippedRecogSeq()