Package util.bio.converters

Bio format converters.

See:
Description

Class Summary

AlignedBaseCounter	Counts and parses the bases in a multiple alignment where each string is broken into three sections like gatcc GGCCAATT cgatcca, ccat GGCCAATT cctttt, like the output from meme the central portion is aligned, the left and right flanks are not.
GenomeFASTASplitter	Splits a whole genome fasta into different files, also rewrites the fasta header to just the first word following the >
PossumToGFF	Converts a copied Possum output to GFF annotation, prints to screen, sorted by score.
RepeatMaskerToGFF	Converts a RepeatMasker output to GFF annotation.

Package util.bio.converters Description

Bio format converters.