util.bio.converters
Class RepeatMaskerToGFF

java.lang.Object
  util.bio.converters.RepeatMaskerToGFF

public class RepeatMaskerToGFF

extends java.lang.Object

Converts a RepeatMasker output to GFF annotation. Prints to screen, sorted by score arg1 = fullpath name to RepeatMaskerFile, arg2(optional) = off set for start (ie 398 indicate that base 1 is really 398)

Constructor Summary

RepeatMaskerToGFF(java.lang.String[] args)

Method Summary

static void	main(java.lang.String[] args)
static void	printStringArray(java.lang.String[] array, java.lang.String separator) Prints out the string array on a line divided by the separator, good for debugging

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RepeatMaskerToGFF

public RepeatMaskerToGFF(java.lang.String[] args)

Method Detail

main

public static void main(java.lang.String[] args)

printStringArray

public static void printStringArray(java.lang.String[] array,
                                    java.lang.String separator)

Prints out the string array on a line divided by the separator, good for debugging