util.bio.annotation
Class ExportIntronicRegions

java.lang.Object
  util.bio.annotation.ExportIntronicRegions

public class ExportIntronicRegions

extends java.lang.Object

Constructor Summary

ExportIntronicRegions(java.lang.String[] args)

Method Summary

void	buildAndPrintIntrons()
java.lang.String[]	fetchIntrons(boolean[] mask, UCSCGeneLine[] genes)
static void	main(java.lang.String[] args)
boolean[]	makeExonMask(UCSCGeneLine[] genes)
static void	printDocs()
void	processArgs(java.lang.String[] args) This method will process each argument and assign new varibles

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExportIntronicRegions

public ExportIntronicRegions(java.lang.String[] args)

Method Detail

buildAndPrintIntrons

public void buildAndPrintIntrons()

fetchIntrons

public java.lang.String[] fetchIntrons(boolean[] mask,
                                       UCSCGeneLine[] genes)

makeExonMask

public boolean[] makeExonMask(UCSCGeneLine[] genes)

main

public static void main(java.lang.String[] args)

processArgs

public void processArgs(java.lang.String[] args)

This method will process each argument and assign new varibles

printDocs

public static void printDocs()