util.bio.parsers
Class UCSCGeneLine

java.lang.Object
  util.bio.parsers.UCSCGeneLine

public class UCSCGeneLine

extends java.lang.Object

Constructor Summary

UCSCGeneLine(java.lang.String[] tokens, int numToSubtractFromEnd)

Method Summary

int	getCdsEnd()
int	getCdsStart()
java.lang.String	getChrom()
ExonIntron[]	getExons()
java.lang.String	getName()
java.lang.String	getNotes()
java.lang.String	getStrand()
int	getTxEnd()
int	getTxStart()
void	setNotes(java.lang.String notes)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

UCSCGeneLine

public UCSCGeneLine(java.lang.String[] tokens,
                    int numToSubtractFromEnd)

Method Detail

toString

public java.lang.String toString()

getCdsEnd

public int getCdsEnd()

getCdsStart

public int getCdsStart()

getChrom

public java.lang.String getChrom()

getExons

public ExonIntron[] getExons()

getName

public java.lang.String getName()

getStrand

public java.lang.String getStrand()

getTxEnd

public int getTxEnd()

getTxStart

public int getTxStart()

getNotes

public java.lang.String getNotes()

setNotes

public void setNotes(java.lang.String notes)