Uses of Package
trans.tpmap

Packages that use trans.tpmap

trans.anno	For associating intervals, binding regions, and binding peaks with GFF annotation.
trans.cel	Apps and methods for manipulating cel files.
trans.tpmap	For maping, filtering, and calculating statistics about text version bpmap files.

Classes in trans.tpmap used by trans.anno

TPMapLine
Minimal tpmap line, chrom, start, nothing else.

Classes in trans.tpmap used by trans.cel

IntensityFeature
Minimal info about a feature for combining multiple chips together.

MapFeature
Tpmap line broken into some components, chromosome, start, pmX, pmY, and optionally, mmX, mmY.

Classes in trans.tpmap used by trans.tpmap

BlastFilterResult
Container for a blast result: chromosome, numMatches, exactMatches, oneBPMismatches, startExactMatch.

MapFeature
Tpmap line broken into some components, chromosome, start, pmX, pmY, and optionally, mmX, mmY.

TPMapFeature
Container for info about a particular oligo feature from a tpmap file.

TPMapLine
Minimal tpmap line, chrom, start, nothing else.