Uses of Class
trans.tpmap.MapFeature

Packages that use MapFeature

trans.cel	Apps and methods for manipulating cel files.
trans.tpmap	For maping, filtering, and calculating statistics about text version bpmap files.

Uses of MapFeature in trans.cel

Methods in trans.cel with parameters of type MapFeature

static void	CelProcessor.breakSaveFeatureArray(java.util.ArrayList bpmapInfo, MapFeature[] mapFeatures, java.io.File celpFile) Use this method to break and save a celp float[] file into chromosomal components in a directory named after the celpFile minus the .celp extension.
static void	CelProcessor.breakAndSaveCelp(java.io.File celpFile, MapFeature[] features) Given a float[] celp file and the corresponding MapFeature[] will make a minimal

Constructors in trans.cel with parameters of type MapFeature

CelMapper(MapFeature[] features, boolean useMMData, boolean printStats)

Uses of MapFeature in trans.tpmap

Methods in trans.tpmap that return MapFeature

static MapFeature[]

ConvertTPMapsToFeatures.convert(java.io.File tpmapFile) Converts a text bpmap to a MapFeature[]

Constructors in trans.tpmap with parameters of type MapFeature

MapSplitter(MapFeature[] features, java.io.File saveDirectory)
For running in combination with BPMapProcessor

IntensityFeature(MapFeature feature, float intensity)