trans.cel
Class CelMapper

java.lang.Object
  trans.cel.CelMapper

public class CelMapper

extends java.lang.Object

Saves float[]s of intensity values for each cel file ordered by the tpmapFeature file. If useMMData is true, will double array size and set mm value afterward.

Constructor Summary

CelMapper(MapFeature[] features, boolean useMMData, boolean printStats)

Method Summary

int	getSizeMappedFeatures()
java.io.File[]	mapCelFiles(java.io.File[] files)
boolean	mapCelFiles(java.io.File[] files, java.io.File[] matchedSaveAsFiles) Maps float[][] to MapFeature[][] saving under the index matched File in matchedSaveAsFiles as a MultiSetQuantile[].

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CelMapper

public CelMapper(MapFeature[] features,
                 boolean useMMData,
                 boolean printStats)

Method Detail

mapCelFiles

public java.io.File[] mapCelFiles(java.io.File[] files)

mapCelFiles

public boolean mapCelFiles(java.io.File[] files,
                           java.io.File[] matchedSaveAsFiles)

Maps float[][] to MapFeature[][] saving under the index matched File in matchedSaveAsFiles as a MultiSetQuantile[]. Will perform a max(PM-MM,1) transform if useMMData is true.

getSizeMappedFeatures

public int getSizeMappedFeatures()