trans.misc
Class Sgr2Bar

java.lang.Object
  trans.misc.Sgr2Bar

public class Sgr2Bar

extends java.lang.Object

Constructor Summary

Sgr2Bar(java.lang.String[] args)

Method Summary

void	createMergedSgrArray()
static void	main(java.lang.String[] args)
void	printBarFiles(Sgr[][] sgrs, java.lang.String name)
static void	printDocs()
void	processArgs(java.lang.String[] args) This method will process each argument and assign new varibles
java.util.HashMap	saveChromSplitSgr(Sgr[][] s, java.io.File tempDirectory) Saves a chromosome split Sgr[][] into temp files.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Sgr2Bar

public Sgr2Bar(java.lang.String[] args)

Method Detail

saveChromSplitSgr

public java.util.HashMap saveChromSplitSgr(Sgr[][] s,
                                           java.io.File tempDirectory)

Saves a chromosome split Sgr[][] into temp files.

Returns:

HashMap of chromName (String): tempFileName (File).

main

public static void main(java.lang.String[] args)

processArgs

public void processArgs(java.lang.String[] args)

This method will process each argument and assign new varibles

printDocs

public static void printDocs()

createMergedSgrArray

public void createMergedSgrArray()

printBarFiles

public void printBarFiles(Sgr[][] sgrs,
                          java.lang.String name)