trans.misc
Class InefficientPseudoMedian

java.lang.Object
  trans.misc.InefficientPseudoMedian

public class InefficientPseudoMedian

extends java.lang.Object

Constructor Summary

InefficientPseudoMedian()

Method Summary

void	cleanUpHash(int newStartTwo) Removes Pairs from the hash or reinstantiates if not needed.
static void	main(java.lang.String[] args)
static void	standard(java.lang.String[] args)
static int[]	totalNumberRatiosByWindowSize(int numOligoRatios, int maxWindowSize) Precaluculates the total number of pairwise ratios for a range of window sizes.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InefficientPseudoMedian

public InefficientPseudoMedian()

Method Detail

cleanUpHash

public void cleanUpHash(int newStartTwo)

Removes Pairs from the hash or reinstantiates if not needed.

totalNumberRatiosByWindowSize

public static int[] totalNumberRatiosByWindowSize(int numOligoRatios,
                                                  int maxWindowSize)

Precaluculates the total number of pairwise ratios for a range of window sizes. The index is the window size 0,1,2,3... maxWindowSize.

main

public static void main(java.lang.String[] args)

standard

public static void standard(java.lang.String[] args)