trans.misc
Class GrGraph

java.lang.Object
  trans.misc.GrGraph

public class GrGraph

extends java.lang.Object

Container for holding info related to a xxx.gr file.

Constructor Summary

GrGraph(java.lang.String chromosome, java.lang.String genomeVersion, int[] basePositions, float[] values)

Method Summary

int[]	getBasePositions()
java.lang.String	getChromosome()
java.lang.String	getGenomeVersion()
float[]	getValues()
void	setBasePositions(int[] basePositions)
void	setChromosome(java.lang.String chromosome)
void	setGenomeVersion(java.lang.String genomeVersion)
void	setValues(float[] values)
boolean	writeGrFile(java.io.File name) Writes to the file base tab value.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GrGraph

public GrGraph(java.lang.String chromosome,
               java.lang.String genomeVersion,
               int[] basePositions,
               float[] values)

Method Detail

writeGrFile

public boolean writeGrFile(java.io.File name)

Writes to the file base tab value. It's strongly recommended to use the chromosome and genomeVersion in the file name!

getBasePositions

public int[] getBasePositions()

setBasePositions

public void setBasePositions(int[] basePositions)

getChromosome

public java.lang.String getChromosome()

setChromosome

public void setChromosome(java.lang.String chromosome)

getGenomeVersion

public java.lang.String getGenomeVersion()

setGenomeVersion

public void setGenomeVersion(java.lang.String genomeVersion)

getValues

public float[] getValues()

setValues

public void setValues(float[] values)